PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009635
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 247aa    MW: 27276.6 Da    PI: 9.7386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009635genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-202170255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a+++a+++++g
  Cla009635 21 HFRGVRKRP-WGRYAAEIRDPCK---KSRVWLGTFDTAEEAARAYDNAAREFRG 70
               69*******.**********854...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-222179IPR016177DNA-binding domain
CDDcd000181.04E-302178No hitNo description
Gene3DG3DSA:3.30.730.101.2E-312178IPR001471AP2/ERF domain
PROSITE profilePS5103223.4722178IPR001471AP2/ERF domain
PfamPF008474.5E-132170IPR001471AP2/ERF domain
SMARTSM003801.5E-392184IPR001471AP2/ERF domain
PRINTSPR003675.2E-112233IPR001471AP2/ERF domain
PRINTSPR003675.2E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAPREKAVAV KPNVGNVKEV HFRGVRKRPW GRYAAEIRDP CKKSRVWLGT FDTAEEAARA  60
YDNAAREFRG VKAKTNFPLP SDDQLLNLNN KINNINNNQS PSQSSTVESS SREQALMVDS  120
SPLNLNLGHG IGGLTTAGPI SFPFQRYQIP VIGEVFTRGI PQSNHVLYFD AALRAGMIKS  180
HPRHPHQQLR FDHLREAMSD FRREFASGGV QSDSDSSSVV DMNGQDLKPR GGGGLDLDLN  240
FPPPETA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-211779164ATERF1
2gcc_A2e-211779164ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439819.11e-130PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLQ5S0041e-130Q5S004_CUCSA; Ethylene response factor 1
STRINGVIT_10s0003g00140.t013e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-27erf domain protein 9